PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g22260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 283aa    MW: 29774.6 Da    PI: 10.1044
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g22260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.27.2e-3928119291
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...kaa 91 
                      a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ a+ns s    ++a
  Vradi08g22260.1  28 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-SVSLSVRAANSASLsspSSA 119
                      78*******************************************************************777.22222222211111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-3334129IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2093488IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSTSDGTTNG VSNASIIDPQ RQQPQALAVK KPPSKDRHSK VDGRGRRIRM PIICAARVFQ  60
LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFSS VSLSVRAANS ASLSSPSSAS  120
DHKPQLLAPT PFILGKRIRT DDDTSKDDAV SVGPSLVGPS TPPGLWALPA RPDFGQIWSF  180
AAAPEMVVQP AAVSVSQQQA SLFAHHQRQQ QQAIGEASAA RVGNYLPGHL NLLASLSGGP  240
GNSVEVILSA WKLVSEVSGL CFPNSTVTPR LLERPTLHSD MG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514723.11e-174PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX23e-94TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0L9U1331e-173A0A0L9U133_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SLC01e-173A0A0S3SLC0_PHAAN; Uncharacterized protein
STRINGGLYMA10G43190.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.17e-79TCP family protein